Videos > Biosensor simulation using Ansys lumerical
Apr 11, 2024

Biosensor Simulation Using Ansys Lumerical

Presenter: Majid Heidari from Ozen Engineering, Inc.

Introduction

Today, I will demonstrate how to design a biosensor using Lumerical. We will be using Lumerical FDTD to simulate a periodic structure composed of different materials such as epoxy and silicon nitride, surrounded by a liquid medium like water. Our goal is to simulate the sensitivity on the spectrum.

Materials and Structure

  • Epoxy: Refractive index of 1.5
  • Silicon Nitride: Refractive index of 2.05

For more details on defining materials and structures, please refer to my complete video on the AIS part, which covers the fundamentals and basic concepts.

Structure Parameters

  • Height of Silicon Nitride: 120 nanometers
  • Height of Epoxy: 200 nanometers
  • Periodicity of Structure: 550 nanometers

Simulation Setup

Simulation Region

We define a simulation region using FDTD. Since this is a periodic structure, one unit cell is sufficient. The simulation is a 2D simulation, and the geometry includes one unit cell. We use a mesh accuracy of 4, which provides 18 points per wavelength.

Boundary Conditions

  • X Direction: Periodic
  • Y Direction: PML (Perfectly Matched Layer)

For advanced options, we use a shutoff value of 1e-9.

Mesh Settings

We define a refined mesh in areas with significant interaction, using a mesh size of 20 nanometers by 20 nanometers. A specific mesh setting of 96 nanometers is applied to certain parts.

Source Definition

The source is a plane wave with a Blachan periodic type, injected along the Y-axis in the forward direction. The frequency range of interest is from 0.75 to 0.9.

Monitors

We have transmission and reflection monitors set up. The monitors are configured to measure frequency, domain, field, and power. Time monitors are also placed in various areas.

Running the Simulation

After setting up, we run the simulation and analyze the results. The transmission versus wavelength is visualized, showing a dip around 0.5. We can adjust parameters to manage wavelength shifts, enhancing the biosensor's efficiency.

Sweep Analysis

We perform a sweep by changing the index of FDTD from 1.33 to 1.35. The results show a shift in the central wavelength, indicating a 20 nanometer shift for different indices.

Electric Field Visualization

By visualizing the electric field for different time simulations, we gain insights into the behavior of the field. A script is used to visualize transmission (T) and reflection (R), with R as blue, T as green, and R + T as red.

Conclusion

This demonstration showcases the capabilities of Lumerical in biosensor design. By altering materials and studying wavelength shifts, we can optimize the biosensor's performance. Thank you for watching.

[This was auto-generated. There may be mispellings.]

Hi, I'm Majid Heidari from Ozen Engineering. Today, I'd like to show you how to design a biosensor using Lumerical. We have a Lumerical FDTD and a periodic structure, as shown here. We have epoxy and silicon nitride in this structure, which we want to surround with water or some liquid.

We will simulate the sensitivity on the spectrum. Let's look at the epoxy materials. Epoxy has a refractive index of 1.5, and silicon nitride has a refractive index of 2. 05. You can add any material you wish. Regarding defining materials and structures, I have a complete video on that.

Please look at the AIS part, where I described the fundamentals and basic parameters. The height of silicon nitride is around 120 nanometers, and for epoxy, it's around 200 nanometers. The periodicity of the structure is around 550 nanometers. We have defined the geometry and structure.

Next, we will define a simulation region. The simulation region here is FDTD. We can select add FDTD region. For this reason, you can see the simulation region here. Since this is a periodic structure, just one unit cell is enough. The orange box shows the simulation of one unit cell.

If you right-click on the FDTD and select edit object, you can see that. This simulation is a 2D simulation. Our geometry includes the one unit cell. We use a mesh accuracy of 4. For the boundary condition in the X direction, we have a periodic structure.

For this, we will use a periodic boundary condition for the X and PML for Y. For the advanced operation option, we use the other shutoff means equal to 1e- 9. Next, we define a refined mesh. If I switch to classical mode, you can see that we define a refinement mesh here.

For the geometry, which includes part of the units, we can define a refined mesh in this area. We can define 20 nanometers per 20 nanometers. Next, we will define the source. Our source is injected by a plane wave. The plane wave type here is Broadband periodic because our structure is periodic.

The injection axis is in the Y axis, as you see in the forward direction. The frequency range we are interested in is from 0.75 to 0. 9. We can change this as well. Finally, we have some monitors. We have transmission monitors and reflection monitors.

For the transmission and reflection monitors, you can come to the monitors and select the monitor as you wish. Here, our monitor is a frequency-domain field and power. I will also put some time monitors in different areas, as you see here. Let's run the simulation. Now, we can see the results.

If I come to transmission and select edit object view, transmission, you can see the visualizer part that shows the transmission versus wavelengths. I can change the unit to micrometers.

Here, you can see that we have a dip around 0. 5. You can see that we have a dip around 0. 5. I can do something with the transmission, such as giving it some color. I can zoom in, and you can see that there is some noise.

I just need to change some of the characteristics, especially in the surface area. We can go into that and take a zoom. I can create a sweep like this, but before I create a sweep, I will save time.

If you right-click on a sweep and select edit, you can change the index of FDTD from 1.33 to 1.34 to 1. 35. I'm interested in the result of transmission and reflection monitors. Let's run the sweep and wait for the result. Now the simulation is finished.

If I right-click on the sweep and select visualize and select T, you can see the X axis as lambda and the Y axis as T. Now, if I click on the index and change the value, you can see three different values for the index.

For the 1.35, our central wavelength shifted to 8. 39. We can manage the amount of shifting in the wavelengths by changing the parameters like the periodic structure to have a very efficient biosensor.

If you write "time" and select visualize and select E, you can see how the electric field behaves for different time simulations. We also have a script here. In this script, we just visualize T from the transmission and R from the reflection. And let's run the simulation.

You can see this is the plot we have. We have R as a blue, T as a green, and R plus T as a red. I hope this design shows you the capability of numerical and biosensor design. In biosensor design, we can change the material and study the amount of shifting of wavelengths versus different materials.

Thank you.